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clc genomics workbench v22.0  (Qiagen)


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    Structured Review

    Qiagen clc genomics workbench v22.0
    Clc Genomics Workbench V22.0, supplied by Qiagen, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/clc+genomics+workbench+v22%2E0/clc+genomics+workbench/pm39892679-176-32-37
    Average 90 stars, based on 1 article reviews
    clc genomics workbench v22.0 - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Control:

    Article Title: Influence of Vibrio anguillarum culture conditions on the efficacy of bacterin-based vaccines in lumpfish (Cyclopterus lumpus).
    Article Snippet: RNA-sequencing data analyses, including raw read processing (e.g., trimming, adapter removal, and quality control) and differential gene expression analysis (e.g., global expression analysis, principal component analysis, heat map) were carried out in CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) using V. anguillarum J360 reference genome (GenBank No. NZ_CP034672.1, NZ_CP034673.1 and NZ_CP034674.1) and a stablished pipeline [21].

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus )
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were mate-paired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Molecular drivers of resistance to sulbactam-durlobactam in contemporary clinical isolates of Acinetobacter baumannii .
    Article Snippet: Assembly and analysis of whole-genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK)
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK).
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus ).
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were matepaired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Baloxavir marboxil use for critical human infection of avian influenza A H5N6 virus.
    Article Snippet: Bacterial and virus strains DG/H5N6-PR8 (‘‘6 + 2’’ recombinant virus) This study; Pan et al.19 N/A Biological samples Blood, throat swabs, sputum, bronchoalveolar lavage fluid and urine from H5N6 patients This study N/A Critical commercial assays QIAamp Viral RNA Kit QIAGEN Cat# 52904 Detection Kit for Influenza A virus RNA HUARUIAN BIOLOGY Cat# HY01101 VAHTS Universal V6 RNA-seq Library Prep Kit Vazyme Cat# NR604 NextSeq 550 System Illumina Cat# SY-415-1002 PrimeScript II 1st Strand cDNA Synthesis Kit TaKaRa Cat# 6210A/B Bio-Plex Pro Human Cytokine Screening Panel, 48-Plex Bio-Rad Cat# 12007283 Deposited data Genome sequences of A/Huizhou/1/2021(H5N6) This study GenBank Accession No.: OK284448-OK284453 Genome sequences of A/Dongguan/2/2021(H5N6) This study GenBank Accession No.: OL519551-OL519558 Experimental models: Cell lines Madin-Darby canine kidney (MDCK) cells ATCC CCL-34 Oligonucleotides Primers for eight segments of influenza A(H5N6) virus, see Data S1 This study N/A Software and algorithms CLC Genomics Workbench v22.0 QIAGEN https://digitalinsights.qiagen.com/ products-overview/discovery-insightsportfolio/analysis-and-visualization/ qiagen-clc-genomics-workbench/ Fastp v0.22.0 OpenGene https://github.com/OpenGene/fastp Bowtie2 v2.3.5.1 Zhu et al.3 https://github.com/BenLangmead/bowtie2 Samtools v1.13 Genome Research Limited https://github.com/samtools/samtools SPAdes v3.15.3 Center for Algorithmic Biotechnology https://github.com/ablab/spades DiversiTools Tool for analysing viral diversity from HTS http://josephhughes.github.io/DiversiTools/ MAFFT v7.487 Zhu et al.3 https://mafft.cbrc.jp/alignment/software/ Graphpad Prism v9.0 Graphpad https://www.graphpad.com/ R software The R Project for Statistical Computing https://www.r-project.org/

    Gene Expression:

    Article Title: Influence of Vibrio anguillarum culture conditions on the efficacy of bacterin-based vaccines in lumpfish (Cyclopterus lumpus).
    Article Snippet: RNA-sequencing data analyses, including raw read processing (e.g., trimming, adapter removal, and quality control) and differential gene expression analysis (e.g., global expression analysis, principal component analysis, heat map) were carried out in CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) using V. anguillarum J360 reference genome (GenBank No. NZ_CP034672.1, NZ_CP034673.1 and NZ_CP034674.1) and a stablished pipeline [21].

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus )
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were mate-paired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Molecular drivers of resistance to sulbactam-durlobactam in contemporary clinical isolates of Acinetobacter baumannii .
    Article Snippet: Assembly and analysis of whole-genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK)
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK).
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus ).
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were matepaired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Baloxavir marboxil use for critical human infection of avian influenza A H5N6 virus.
    Article Snippet: Bacterial and virus strains DG/H5N6-PR8 (‘‘6 + 2’’ recombinant virus) This study; Pan et al.19 N/A Biological samples Blood, throat swabs, sputum, bronchoalveolar lavage fluid and urine from H5N6 patients This study N/A Critical commercial assays QIAamp Viral RNA Kit QIAGEN Cat# 52904 Detection Kit for Influenza A virus RNA HUARUIAN BIOLOGY Cat# HY01101 VAHTS Universal V6 RNA-seq Library Prep Kit Vazyme Cat# NR604 NextSeq 550 System Illumina Cat# SY-415-1002 PrimeScript II 1st Strand cDNA Synthesis Kit TaKaRa Cat# 6210A/B Bio-Plex Pro Human Cytokine Screening Panel, 48-Plex Bio-Rad Cat# 12007283 Deposited data Genome sequences of A/Huizhou/1/2021(H5N6) This study GenBank Accession No.: OK284448-OK284453 Genome sequences of A/Dongguan/2/2021(H5N6) This study GenBank Accession No.: OL519551-OL519558 Experimental models: Cell lines Madin-Darby canine kidney (MDCK) cells ATCC CCL-34 Oligonucleotides Primers for eight segments of influenza A(H5N6) virus, see Data S1 This study N/A Software and algorithms CLC Genomics Workbench v22.0 QIAGEN https://digitalinsights.qiagen.com/ products-overview/discovery-insightsportfolio/analysis-and-visualization/ qiagen-clc-genomics-workbench/ Fastp v0.22.0 OpenGene https://github.com/OpenGene/fastp Bowtie2 v2.3.5.1 Zhu et al.3 https://github.com/BenLangmead/bowtie2 Samtools v1.13 Genome Research Limited https://github.com/samtools/samtools SPAdes v3.15.3 Center for Algorithmic Biotechnology https://github.com/ablab/spades DiversiTools Tool for analysing viral diversity from HTS http://josephhughes.github.io/DiversiTools/ MAFFT v7.487 Zhu et al.3 https://mafft.cbrc.jp/alignment/software/ Graphpad Prism v9.0 Graphpad https://www.graphpad.com/ R software The R Project for Statistical Computing https://www.r-project.org/

    Expressing:

    Article Title: Influence of Vibrio anguillarum culture conditions on the efficacy of bacterin-based vaccines in lumpfish (Cyclopterus lumpus).
    Article Snippet: RNA-sequencing data analyses, including raw read processing (e.g., trimming, adapter removal, and quality control) and differential gene expression analysis (e.g., global expression analysis, principal component analysis, heat map) were carried out in CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) using V. anguillarum J360 reference genome (GenBank No. NZ_CP034672.1, NZ_CP034673.1 and NZ_CP034674.1) and a stablished pipeline [21].

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus )
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were mate-paired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Molecular drivers of resistance to sulbactam-durlobactam in contemporary clinical isolates of Acinetobacter baumannii .
    Article Snippet: Assembly and analysis of whole-genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK)
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK).
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus ).
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were matepaired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Baloxavir marboxil use for critical human infection of avian influenza A H5N6 virus.
    Article Snippet: Bacterial and virus strains DG/H5N6-PR8 (‘‘6 + 2’’ recombinant virus) This study; Pan et al.19 N/A Biological samples Blood, throat swabs, sputum, bronchoalveolar lavage fluid and urine from H5N6 patients This study N/A Critical commercial assays QIAamp Viral RNA Kit QIAGEN Cat# 52904 Detection Kit for Influenza A virus RNA HUARUIAN BIOLOGY Cat# HY01101 VAHTS Universal V6 RNA-seq Library Prep Kit Vazyme Cat# NR604 NextSeq 550 System Illumina Cat# SY-415-1002 PrimeScript II 1st Strand cDNA Synthesis Kit TaKaRa Cat# 6210A/B Bio-Plex Pro Human Cytokine Screening Panel, 48-Plex Bio-Rad Cat# 12007283 Deposited data Genome sequences of A/Huizhou/1/2021(H5N6) This study GenBank Accession No.: OK284448-OK284453 Genome sequences of A/Dongguan/2/2021(H5N6) This study GenBank Accession No.: OL519551-OL519558 Experimental models: Cell lines Madin-Darby canine kidney (MDCK) cells ATCC CCL-34 Oligonucleotides Primers for eight segments of influenza A(H5N6) virus, see Data S1 This study N/A Software and algorithms CLC Genomics Workbench v22.0 QIAGEN https://digitalinsights.qiagen.com/ products-overview/discovery-insightsportfolio/analysis-and-visualization/ qiagen-clc-genomics-workbench/ Fastp v0.22.0 OpenGene https://github.com/OpenGene/fastp Bowtie2 v2.3.5.1 Zhu et al.3 https://github.com/BenLangmead/bowtie2 Samtools v1.13 Genome Research Limited https://github.com/samtools/samtools SPAdes v3.15.3 Center for Algorithmic Biotechnology https://github.com/ablab/spades DiversiTools Tool for analysing viral diversity from HTS http://josephhughes.github.io/DiversiTools/ MAFFT v7.487 Zhu et al.3 https://mafft.cbrc.jp/alignment/software/ Graphpad Prism v9.0 Graphpad https://www.graphpad.com/ R software The R Project for Statistical Computing https://www.r-project.org/

    Virus:

    Article Title: Influence of Vibrio anguillarum culture conditions on the efficacy of bacterin-based vaccines in lumpfish (Cyclopterus lumpus).
    Article Snippet: RNA-sequencing data analyses, including raw read processing (e.g., trimming, adapter removal, and quality control) and differential gene expression analysis (e.g., global expression analysis, principal component analysis, heat map) were carried out in CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) using V. anguillarum J360 reference genome (GenBank No. NZ_CP034672.1, NZ_CP034673.1 and NZ_CP034674.1) and a stablished pipeline [21].

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus )
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were mate-paired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Molecular drivers of resistance to sulbactam-durlobactam in contemporary clinical isolates of Acinetobacter baumannii .
    Article Snippet: Assembly and analysis of whole-genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK)
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK).
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus ).
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were matepaired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Baloxavir marboxil use for critical human infection of avian influenza A H5N6 virus.
    Article Snippet: Bacterial and virus strains DG/H5N6-PR8 (‘‘6 + 2’’ recombinant virus) This study; Pan et al.19 N/A Biological samples Blood, throat swabs, sputum, bronchoalveolar lavage fluid and urine from H5N6 patients This study N/A Critical commercial assays QIAamp Viral RNA Kit QIAGEN Cat# 52904 Detection Kit for Influenza A virus RNA HUARUIAN BIOLOGY Cat# HY01101 VAHTS Universal V6 RNA-seq Library Prep Kit Vazyme Cat# NR604 NextSeq 550 System Illumina Cat# SY-415-1002 PrimeScript II 1st Strand cDNA Synthesis Kit TaKaRa Cat# 6210A/B Bio-Plex Pro Human Cytokine Screening Panel, 48-Plex Bio-Rad Cat# 12007283 Deposited data Genome sequences of A/Huizhou/1/2021(H5N6) This study GenBank Accession No.: OK284448-OK284453 Genome sequences of A/Dongguan/2/2021(H5N6) This study GenBank Accession No.: OL519551-OL519558 Experimental models: Cell lines Madin-Darby canine kidney (MDCK) cells ATCC CCL-34 Oligonucleotides Primers for eight segments of influenza A(H5N6) virus, see Data S1 This study N/A Software and algorithms CLC Genomics Workbench v22.0 QIAGEN https://digitalinsights.qiagen.com/ products-overview/discovery-insightsportfolio/analysis-and-visualization/ qiagen-clc-genomics-workbench/ Fastp v0.22.0 OpenGene https://github.com/OpenGene/fastp Bowtie2 v2.3.5.1 Zhu et al.3 https://github.com/BenLangmead/bowtie2 Samtools v1.13 Genome Research Limited https://github.com/samtools/samtools SPAdes v3.15.3 Center for Algorithmic Biotechnology https://github.com/ablab/spades DiversiTools Tool for analysing viral diversity from HTS http://josephhughes.github.io/DiversiTools/ MAFFT v7.487 Zhu et al.3 https://mafft.cbrc.jp/alignment/software/ Graphpad Prism v9.0 Graphpad https://www.graphpad.com/ R software The R Project for Statistical Computing https://www.r-project.org/

    Recombinant:

    Article Title: Influence of Vibrio anguillarum culture conditions on the efficacy of bacterin-based vaccines in lumpfish (Cyclopterus lumpus).
    Article Snippet: RNA-sequencing data analyses, including raw read processing (e.g., trimming, adapter removal, and quality control) and differential gene expression analysis (e.g., global expression analysis, principal component analysis, heat map) were carried out in CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) using V. anguillarum J360 reference genome (GenBank No. NZ_CP034672.1, NZ_CP034673.1 and NZ_CP034674.1) and a stablished pipeline [21].

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus )
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were mate-paired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Molecular drivers of resistance to sulbactam-durlobactam in contemporary clinical isolates of Acinetobacter baumannii .
    Article Snippet: Assembly and analysis of whole-genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK)
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK).
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus ).
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were matepaired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Baloxavir marboxil use for critical human infection of avian influenza A H5N6 virus.
    Article Snippet: Bacterial and virus strains DG/H5N6-PR8 (‘‘6 + 2’’ recombinant virus) This study; Pan et al.19 N/A Biological samples Blood, throat swabs, sputum, bronchoalveolar lavage fluid and urine from H5N6 patients This study N/A Critical commercial assays QIAamp Viral RNA Kit QIAGEN Cat# 52904 Detection Kit for Influenza A virus RNA HUARUIAN BIOLOGY Cat# HY01101 VAHTS Universal V6 RNA-seq Library Prep Kit Vazyme Cat# NR604 NextSeq 550 System Illumina Cat# SY-415-1002 PrimeScript II 1st Strand cDNA Synthesis Kit TaKaRa Cat# 6210A/B Bio-Plex Pro Human Cytokine Screening Panel, 48-Plex Bio-Rad Cat# 12007283 Deposited data Genome sequences of A/Huizhou/1/2021(H5N6) This study GenBank Accession No.: OK284448-OK284453 Genome sequences of A/Dongguan/2/2021(H5N6) This study GenBank Accession No.: OL519551-OL519558 Experimental models: Cell lines Madin-Darby canine kidney (MDCK) cells ATCC CCL-34 Oligonucleotides Primers for eight segments of influenza A(H5N6) virus, see Data S1 This study N/A Software and algorithms CLC Genomics Workbench v22.0 QIAGEN https://digitalinsights.qiagen.com/ products-overview/discovery-insightsportfolio/analysis-and-visualization/ qiagen-clc-genomics-workbench/ Fastp v0.22.0 OpenGene https://github.com/OpenGene/fastp Bowtie2 v2.3.5.1 Zhu et al.3 https://github.com/BenLangmead/bowtie2 Samtools v1.13 Genome Research Limited https://github.com/samtools/samtools SPAdes v3.15.3 Center for Algorithmic Biotechnology https://github.com/ablab/spades DiversiTools Tool for analysing viral diversity from HTS http://josephhughes.github.io/DiversiTools/ MAFFT v7.487 Zhu et al.3 https://mafft.cbrc.jp/alignment/software/ Graphpad Prism v9.0 Graphpad https://www.graphpad.com/ R software The R Project for Statistical Computing https://www.r-project.org/

    RNA Sequencing Assay:

    Article Title: Influence of Vibrio anguillarum culture conditions on the efficacy of bacterin-based vaccines in lumpfish (Cyclopterus lumpus).
    Article Snippet: RNA-sequencing data analyses, including raw read processing (e.g., trimming, adapter removal, and quality control) and differential gene expression analysis (e.g., global expression analysis, principal component analysis, heat map) were carried out in CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) using V. anguillarum J360 reference genome (GenBank No. NZ_CP034672.1, NZ_CP034673.1 and NZ_CP034674.1) and a stablished pipeline [21].

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus )
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were mate-paired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Molecular drivers of resistance to sulbactam-durlobactam in contemporary clinical isolates of Acinetobacter baumannii .
    Article Snippet: Assembly and analysis of whole-genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK)
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK).
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus ).
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were matepaired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Baloxavir marboxil use for critical human infection of avian influenza A H5N6 virus.
    Article Snippet: Bacterial and virus strains DG/H5N6-PR8 (‘‘6 + 2’’ recombinant virus) This study; Pan et al.19 N/A Biological samples Blood, throat swabs, sputum, bronchoalveolar lavage fluid and urine from H5N6 patients This study N/A Critical commercial assays QIAamp Viral RNA Kit QIAGEN Cat# 52904 Detection Kit for Influenza A virus RNA HUARUIAN BIOLOGY Cat# HY01101 VAHTS Universal V6 RNA-seq Library Prep Kit Vazyme Cat# NR604 NextSeq 550 System Illumina Cat# SY-415-1002 PrimeScript II 1st Strand cDNA Synthesis Kit TaKaRa Cat# 6210A/B Bio-Plex Pro Human Cytokine Screening Panel, 48-Plex Bio-Rad Cat# 12007283 Deposited data Genome sequences of A/Huizhou/1/2021(H5N6) This study GenBank Accession No.: OK284448-OK284453 Genome sequences of A/Dongguan/2/2021(H5N6) This study GenBank Accession No.: OL519551-OL519558 Experimental models: Cell lines Madin-Darby canine kidney (MDCK) cells ATCC CCL-34 Oligonucleotides Primers for eight segments of influenza A(H5N6) virus, see Data S1 This study N/A Software and algorithms CLC Genomics Workbench v22.0 QIAGEN https://digitalinsights.qiagen.com/ products-overview/discovery-insightsportfolio/analysis-and-visualization/ qiagen-clc-genomics-workbench/ Fastp v0.22.0 OpenGene https://github.com/OpenGene/fastp Bowtie2 v2.3.5.1 Zhu et al.3 https://github.com/BenLangmead/bowtie2 Samtools v1.13 Genome Research Limited https://github.com/samtools/samtools SPAdes v3.15.3 Center for Algorithmic Biotechnology https://github.com/ablab/spades DiversiTools Tool for analysing viral diversity from HTS http://josephhughes.github.io/DiversiTools/ MAFFT v7.487 Zhu et al.3 https://mafft.cbrc.jp/alignment/software/ Graphpad Prism v9.0 Graphpad https://www.graphpad.com/ R software The R Project for Statistical Computing https://www.r-project.org/

    Software:

    Article Title: Influence of Vibrio anguillarum culture conditions on the efficacy of bacterin-based vaccines in lumpfish (Cyclopterus lumpus).
    Article Snippet: RNA-sequencing data analyses, including raw read processing (e.g., trimming, adapter removal, and quality control) and differential gene expression analysis (e.g., global expression analysis, principal component analysis, heat map) were carried out in CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) using V. anguillarum J360 reference genome (GenBank No. NZ_CP034672.1, NZ_CP034673.1 and NZ_CP034674.1) and a stablished pipeline [21].

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus )
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were mate-paired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Molecular drivers of resistance to sulbactam-durlobactam in contemporary clinical isolates of Acinetobacter baumannii .
    Article Snippet: Assembly and analysis of whole-genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK)
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Characterization of Acinetobacter baumannii-calcoaceticus complex isolates and microbiological outcome for patients treated with sulbactam-durlobactam in a phase 3 trial (ATTACK).
    Article Snippet: Assembly and analysis of whole genome sequencing were performed using CLC Genomics Workbench v22.0 (Qiagen).

    Article Title: Role of cold shock proteins B and D in Aeromonas salmonicida subsp. salmonicida physiology and virulence in lumpfish ( Cyclopterus lumpus ).
    Article Snippet: To remove low-quality reads from RNA sequences, paired-end raw reads were matepaired and filtered by using CLC Genomics Workbench v22.0 (CLCGWB; Qiagen, Hilden, Germany) with default parameters (mate-paired read information, minimum distance = 1; maximum distance = 1000).

    Article Title: Baloxavir marboxil use for critical human infection of avian influenza A H5N6 virus.
    Article Snippet: Bacterial and virus strains DG/H5N6-PR8 (‘‘6 + 2’’ recombinant virus) This study; Pan et al.19 N/A Biological samples Blood, throat swabs, sputum, bronchoalveolar lavage fluid and urine from H5N6 patients This study N/A Critical commercial assays QIAamp Viral RNA Kit QIAGEN Cat# 52904 Detection Kit for Influenza A virus RNA HUARUIAN BIOLOGY Cat# HY01101 VAHTS Universal V6 RNA-seq Library Prep Kit Vazyme Cat# NR604 NextSeq 550 System Illumina Cat# SY-415-1002 PrimeScript II 1st Strand cDNA Synthesis Kit TaKaRa Cat# 6210A/B Bio-Plex Pro Human Cytokine Screening Panel, 48-Plex Bio-Rad Cat# 12007283 Deposited data Genome sequences of A/Huizhou/1/2021(H5N6) This study GenBank Accession No.: OK284448-OK284453 Genome sequences of A/Dongguan/2/2021(H5N6) This study GenBank Accession No.: OL519551-OL519558 Experimental models: Cell lines Madin-Darby canine kidney (MDCK) cells ATCC CCL-34 Oligonucleotides Primers for eight segments of influenza A(H5N6) virus, see Data S1 This study N/A Software and algorithms CLC Genomics Workbench v22.0 QIAGEN https://digitalinsights.qiagen.com/ products-overview/discovery-insightsportfolio/analysis-and-visualization/ qiagen-clc-genomics-workbench/ Fastp v0.22.0 OpenGene https://github.com/OpenGene/fastp Bowtie2 v2.3.5.1 Zhu et al.3 https://github.com/BenLangmead/bowtie2 Samtools v1.13 Genome Research Limited https://github.com/samtools/samtools SPAdes v3.15.3 Center for Algorithmic Biotechnology https://github.com/ablab/spades DiversiTools Tool for analysing viral diversity from HTS http://josephhughes.github.io/DiversiTools/ MAFFT v7.487 Zhu et al.3 https://mafft.cbrc.jp/alignment/software/ Graphpad Prism v9.0 Graphpad https://www.graphpad.com/ R software The R Project for Statistical Computing https://www.r-project.org/



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